Download Magic Blue Hack Java

Posted By admin On 29/11/21

Java-based educational program that helps you explore and process DNA microarray TIFF files, distinguish signal from noise, generate a series of clusters, filter your data by removing unnecessary genes, and calculate dissimilarities

Blood Magic Lucky Blocks. Downloads Updated Jun 14, 2021 Created Jun 14, 2021. This mod some of the 1.17 features in 1.16 Download.

What's new in MAGIC Tool 2.1.0:

  • Users can move multiple grids at once with the shift key.
  • Users can combine multiple grid files.
  • Spot flagging is significantly faster
  • In Segmentation, users can visualize MA and RI plots.
Read the full changelog

MAGIC Tool is a Java-based Windows application whose purpose is to help you analyze DNA microarray TIFF files and process comparative hybridization data (glass chips) and Affymetrix information.

Portable running mode

You can take advantage of the fact that the tool comes in a portable package and deploy it directly on your computer without having to go through an installation process. Plus, your Windows registry doesn’t get bloated with unnecessary entries. You can store it on any USB flash drive or other devices and take it you.

User interface

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MAGIC Tool adopts a clean layout that lets you add files in the working environment using the built-in browse button (there’s no support for drag-and-drop). You can preview the content of the file, explore it using the zoom in and out functions, fit the image to the screen, set the top left and right spots, specify the bottom row, as well as adjust the number of rows and columns.

Defining new projects

The application makes use of projects for storing details and configuration settings about the imported data and performed calculations. Projects can be saved and added for future editing tasks.

You can import items with different file formats (TXT, JPEG, TIF, GIF, GRID, INFO or FLAG), add the content of an entire folder, insert files in the project folder and update the project (the adjustments are automatically applied), as well as load the red and green TIFF image pairs.

Additionally, you can load the gene list and create a new grid or add a saved one. When it comes to grid creation, you can enter the total number of grids in the TIFF file, specify the spot orientation within the grids (horizontally or vertically), adjust the contrast to help illuminate faint spots, center current grid, enter grid location information using three clicks (setting top left and right spots, and bottom row), adjust the grid to center spots, create multiple grids, and flag problematic spots (optionally).

Distinguish signal from noise, generate a series of clusters and more

MAGIC Tool gives you the possibility to distinguish signal from background and generate expression file. You can choose between different methods for distinguishing signal from background, namely fixed or adaptive circle, seeded region growing option (designed for finding the signal for each spot based on the distribution of the signal), or ratio methods (red foreground and background or green foreground and background in order to determine the ratio for each feature on the microarray).

What’s more, you can repeat several steps for experimental conditions in your study, manipulate data (transform, normalize, limit data, filter or scramble), add gene info to expression file, filter your data by removing unnecessary genes, calculate dissimilarities (by measuring the differences between every pair of gene expression patterns), generate a series of clusters, build up a list of tasks to be performed in sequence, and compare the consequences of different choices for quantifying, comparing and clustering the same raw dataset .

Bottom line

All in all, MAGIC Tool proves to be a reliable tool that can be used as a powerful educational instrument for helping students explore and process DNA microarray TIFF files.

Filed under

MAGIC Tool was reviewed by Ana Marculescu

Download Magic Blue Hack Java Free

4.0/5
SYSTEM REQUIREMENTS
This enables Disqus, Inc. to process some of your data. Disqus privacy policy

MAGIC Tool 2.1.0

add to watchlistsend us an update
runs on:
Windows All
file size:
17.1 MB
filename:
MagicTool_2-1.zip
main category:
Others
developer:
visit homepage

top alternatives FREE

top alternatives PAID

Java-based educational program that helps you explore and process DNA microarray TIFF files, distinguish signal from noise, generate a series of clusters, filter your data by removing unnecessary genes, and calculate dissimilarities

What's new in MAGIC Tool 2.1.0:

  • Users can move multiple grids at once with the shift key.
  • Users can combine multiple grid files.
  • Spot flagging is significantly faster
  • In Segmentation, users can visualize MA and RI plots.
Read the full changelog

Download Magic Blue Hack Java Download

MAGIC Tool is a Java-based Windows application whose purpose is to help you analyze DNA microarray TIFF files and process comparative hybridization data (glass chips) and Affymetrix information.

Portable running mode

You can take advantage of the fact that the tool comes in a portable package and deploy it directly on your computer without having to go through an installation process. Plus, your Windows registry doesn’t get bloated with unnecessary entries. You can store it on any USB flash drive or other devices and take it you.

User interface

MAGIC Tool adopts a clean layout that lets you add files in the working environment using the built-in browse button (there’s no support for drag-and-drop). You can preview the content of the file, explore it using the zoom in and out functions, fit the image to the screen, set the top left and right spots, specify the bottom row, as well as adjust the number of rows and columns.

Defining new projects

The application makes use of projects for storing details and configuration settings about the imported data and performed calculations. Projects can be saved and added for future editing tasks.

You can import items with different file formats (TXT, JPEG, TIF, GIF, GRID, INFO or FLAG), add the content of an entire folder, insert files in the project folder and update the project (the adjustments are automatically applied), as well as load the red and green TIFF image pairs.

Additionally, you can load the gene list and create a new grid or add a saved one. When it comes to grid creation, you can enter the total number of grids in the TIFF file, specify the spot orientation within the grids (horizontally or vertically), adjust the contrast to help illuminate faint spots, center current grid, enter grid location information using three clicks (setting top left and right spots, and bottom row), adjust the grid to center spots, create multiple grids, and flag problematic spots (optionally).

Distinguish signal from noise, generate a series of clusters and more

MAGIC Tool gives you the possibility to distinguish signal from background and generate expression file. You can choose between different methods for distinguishing signal from background, namely fixed or adaptive circle, seeded region growing option (designed for finding the signal for each spot based on the distribution of the signal), or ratio methods (red foreground and background or green foreground and background in order to determine the ratio for each feature on the microarray).

What’s more, you can repeat several steps for experimental conditions in your study, manipulate data (transform, normalize, limit data, filter or scramble), add gene info to expression file, filter your data by removing unnecessary genes, calculate dissimilarities (by measuring the differences between every pair of gene expression patterns), generate a series of clusters, build up a list of tasks to be performed in sequence, and compare the consequences of different choices for quantifying, comparing and clustering the same raw dataset .

Bottom line

All in all, MAGIC Tool proves to be a reliable tool that can be used as a powerful educational instrument for helping students explore and process DNA microarray TIFF files.

Filed under

HackMAGIC Tool was reviewed by Ana Marculescu

Download Magic Blue Hack Java Edition

4.0/5
SYSTEM REQUIREMENTS
This enables Disqus, Inc. to process some of your data. Disqus privacy policy

Download Magic Blue Hack Java Code

MAGIC Tool 2.1.0

add to watchlistsend us an update
runs on:
Windows All
file size:
17.1 MB
filename:
MagicTool_2-1.zip
main category:
Others
developer:
visit homepage

top alternatives FREE

top alternatives PAID